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FoldMiner identified the motif displayed in the left frame by determining which secondary structure elements frequently align well to homologous structures. It may be possible to identify additional structural neighbors or additional motifs by excluding poorly or well conserved secondary structural elements, respectively.

To attempt to identify another motif, please select from the list below seconday structure elements that should be excluded from the motif discovery algorithm.

Exclude Residues Conservation Type Blink
2-4 0.42 Strand
8-12 0.55 Strand
17-19 0.65 Strand
22-24 0.22 Strand
34-41 0.74 Strand
48-54 0.39 Strand
57-60 0.20 Strand
70-72 0.61 Strand
83-85 0.77 Strand
94-101 0.85 Strand
109-118 0.71 Strand

To reanalyze your results using different search parameters:  If you do not exclude any secondary structure elements, your results will be reanalyzed using the search parameters you specify. (Leave all checkboxes above unchecked and specify your search parameters below.)

Structural Similarity Search Options
Expectation Alignment Scope
e
Global
Local


Conservation Profile's Contribution to Recalculated SSE Scores:
(Value must lie on the interval [0,1])

The query structure is a member of SCOP fold b.1 (Immunoglobulin-like beta-sandwich). By default, a background score distribution specific to this fold will be used to analyze your results. You may specify a different distribution here.
Use background distribution for: