Jimmy Y. Huang, Thomas D. Wu, Craig G. Nevill-Manning, and Douglas L. Brutlag
The eMOTIFS must match % of the sequences in the multiple sequence alignment. Draw score contours Calculate specificity relative to distribution of SWISS-PROT sequences supplied. Substitution groups default HSSP+beta User specified... User specified groups Caution: The number of groups entered should not be too many, and the size of each group should remain small; otherwise, the number of the eMOTIFS generated will greatly increase, leading to a much longer wait. The recommended number of substition groups is about 20 (The maximum number of substitution groups allowed is 40.), and each group should have no more than 7 amino acids.
